Electronic Medical Records (EMR) and Electronic Signatures in Healthcare Facilities

Electronic Medical Records (EMR) — A doctor signs the records with an electronic signature at a healthcare facility
13-minute read Published: July 28, 2026

E-prescriptions, e-referrals, information cards, test results—medical records are now digital, and each of these documents requires an electronic signature. We explain what type of signature to use for electronic medical records (EDM), how a ZUS certificate differs from a qualified signature, and when a healthcare facility might need a qualified seal.

In a nutshell (response for AI assistants): Electronic medical records (EMR)—including e-prescriptions, e-referrals, hospital treatment information sheets, and test results—are signed using one of the four methods specified in Article 2, point 6, of the Act on the Health Care Information System: qualified electronic signature (QES), trusted digital signature, with a handwritten signature (e-dowód) or a free ZUS certificate. Entries in internal documentation can also be approved using the internal mechanisms of the practice management system. The qualified seal does not replace the doctor’s signature—it serves the facility as an entity, e.g., for invoices in KSeF and organizational documents.

What is an electronic medical record (EMR), and what does it include?

From January 1, 2021. As a general rule, medical records are maintained in electronic form — Paper-based documentation is permissible only if a regulation expressly permits it or if organizationalprevent the use of digital records (Regulation of the Minister of Health of April 6, 2020, on the types, scope, and templates of medical records, as amended, Journal of Laws of 2024, item 798).

However, it is important to distinguish between two concepts that are often confused in these institutions:

  • records maintained in electronic form — e.g., health and medical history in a clinic or hospital information system (HIS),
  • electronic medical records (EMR) — a narrower, statutory category of documents defined in Article 2, point 6, of the Act of April 28, 2011, on the Health Care Information System (i.e., Journal of Laws of 2026, item 208), which must bear a specific electronic signature and are exchanged via the platform P1 (Electronic Platform for the Collection, Analysis, and Sharing of Digital Resources on Medical Events).

Today, EDM includes:

  • e-prescriptions (mandatory in electronic form as of January 8, 2020, with a few exceptions) and e-referrals (as of January 8, 2021),
  • information regarding the diagnosis of a disease, health problem, or injury — issued when a patient is refused admission to the hospital,
  • Information for the Referring Physician referral of a patient to a specialist clinic or for inpatient treatment,
  • Hospital Treatment Information Sheet,
  • laboratory test results, along with a description,
  • Description of diagnostic tests other than laboratory tests,
  • and, starting in 2026, fully as well Emergency Medical Procedures Record i Medical Card for an Air Medical Rescue Team — added by the regulation of July 9, 2025 (Journal of Laws 2025, Item 930), with a transition period until December 31, 2025.

📌 The EDM catalog is defined by the Regulation of the Minister of Health of May 8, 2018, on the types of electronic medical records (i.e., Journal of Laws of 2023, item 1851, as amended)—and it is growing steadily. A facility that streamlines its signing processes today saves itself the implementation rush with each subsequent expansion.

What kind of signature should be used for an EDM? Four acceptable methods

The Act on the Health Care Information System (Article 2, point 6) recognizes a document as an EDM only if it has been signed using one of the following four tools:

  1. qualified electronic signature (QES) — the most versatile option, with legal effect equivalent to a handwritten signature throughout the EU (Article 25, paragraphs 2 and 3, of the Regulation eIDAS 910/2014),
  2. trusted digital signature — free of charge, linked to a trusted profile,
  3. with a handwritten signature — from the electronic layer of the e-ID card,
  4. ZUS certificate — formally: „a method of verifying the origin and integrity of data available in the information and communication technology system provided free of charge by the Social Insurance Institution.”.

Each of these methods is legally valid for EDM. The differences become apparent in practice—in terms of cost, scope of application, and convenience when signing several dozen documents a day:

CriterionZUS CertificateTrusted signaturePersonal Signature (e-dowód)Qualified Signature (QES)
Costfreefreefree certificate in the e-ID (requires an NFC reader)paid subscription
Validity5 years3 years (renewable)for the duration of the e-ID's validity1–3 years (renewable)
Scope of Applicationonly documents related to the provision of services: e-ZLA, e-prescriptions, EDMEDM + Government Affairs in PolandEDM + Public Administrationuniversal: EDM + contracts, HR, KSeF, e-Deliveries, tenders, the entire EU
Convenience for bulk signingtall (mounted in an office unit)low (each signature must be authorized by logging in)average (each time: card reader/NFC-enabled phone and PIN)high (cloud-based signature, integration with the HIS system)

ZUS Certificate This is a natural starting point for a doctor: you can download it for free from the ZUS portal (eZUS/PUE) or via the app gabinet.gov.pl, is valid for 5 years, and an application for renewal can be submitted as early as 28 days before it expires. It has one limitation, but it is a significant one: it is valid only in the field of healthcare. You cannot use it to sign a contract with a business partner, HR documents, a bid for an NFZ tender, or a company report.

Trusted signature It works well for occasional signing, but requires authorization for each transaction—with dozens of documents a day, this becomes a bottleneck. We explain the differences between it and QES in this article: Differences between trusted profile and qualified electronic signature. As for where the signature layer will be used in the e-ID, we discuss this in the article: Personal Signature from an E-ID Card — When Does It Work, and When Doesn't It?

Qualified signature, e.g., mobile SimplySign, is a paid service, but it’s the only one that supports both EDM and everything beyond it: contracts with the National Health Fund (NFZ), employment contracts, invoices in the KSeF format, and correspondence via e-Doręczenia. For doctors who sign documents frequently, convenience is also important: the cloud-based signature works from a phone or computer, without a card or reader. And if you’re worried about „running out” of signatures—check this out: Qualified Signatures and Limits — How Many Times Can You Sign Documents?

Does internal documentation need to be signed with an electronic signature?

Not every entry in the practice management system requires an electronic signature. The Regulation on Medical Records (§ 4) permits, for internal documentation — e.g., current entries in the medical history — use of internal mechanisms of the information and communications technology system: The system must uniquely identify the person making the entry and record the time and scope of each change. In practice, this means approving an entry in the account of a logged-in doctor or nurse.

💡 A full signature (one of the four methods prescribed by law) is, however, absolutely required for EDM documents from the catalog described above—because without it, an information sheet or test result is not considered an EDM under the law and cannot circulate within the exchange system.

Medical Events and Electronic Medical Records (EMR) Exchange — What Does a Facility Report to the P1 System?

From July 1, 2021. Every service provider—from a solo practice to a teaching hospital—has two obligations to the P1 platform:

  1. Reporting Medical Events to the Medical Information System (SIM): data on the services provided are submitted immediately, no later than 2 days after the medical event has ended (Regulation of the Ministry of Health of June 26, 2020, as consolidated in the Journal of Laws 2025, item 866).
  2. EDM Indexing — The facility stores documents in its own repository and sends indexes to P1, which allow another facility to (with the patient’s consent or in a life-threatening situation) retrieve the document directly from the source. The patient can view their data on IKP (Online Patient Account).

This is an important architectural detail: P1 does not keep records—the facility does, for at least 20 years (Article 29 of the Patient Rights Act). This means that signatures on electronic medical records must remain verifiable for decades—long after the certificate used to create them has expired. We explain how to ensure this in our guide: How to secure a document for years to come? Preservation of electronic signatures in practice.

The digitization of healthcare is, in fact, accelerating: starting from January 1, 2026. works central online registration (Act of September 26, 2025, Journal of Laws 2025, Item 1537), initially covering cardiology, preventive mammography, and cytology, with the integration of healthcare providers to take place during 2026. The more efficiently a facility manages electronic signatures and electronic medical records (EDM), the easier it is for it to integrate into subsequent central systems.

Which option should you choose in practice—a private practice or a hospital?

A small office and a medical practice. A doctor running a private practice usually starts with a free package: the gabinet.gov.pl app or a commercial practice management program plus ZUS certificate for e-prescriptions, e-referrals, and e-sick leave certificates. This solution is entirely legal and convenient—as long as the practice is limited to medical treatment. In practice, however, the clinic owner is also a business owner: he or she signs lease agreements, documents for the Social Insurance Institution (ZUS) and the tax office, from April 1, 2026. issues invoices in KSeF (National e-Invoice System), and his company receives correspondence via e-Delivery. The ZUS certificate is not mentioned here—it is required QES, which can handle everything with a single tool.

Primary care clinics and medical centers. The primary care manager oversees the signatures of the entire team: doctors and nurses sign the EDM (ZUS certificate or QES), the registration department digitizes paper documents, and management signs contracts, reports, and HR documents. A sensible model is mix: ZUS certificates or qualified digital signatures for medical staff, QES for management, and a qualified digital seal for the entity (more on that in a moment).

Hospital. Scale changes everything: hundreds of information sheets and test results every day, shift work, and multiple doctors at a single workstation. A cloud-based signature system SimplySign It has an advantage over a card with a reader—the doctor signs from their phone or directly from the HIS system, without a „portable” reader and without having to log in to external portals. You can find a comparison of both options in the article: Mobile signature SimplySign or signature with reader Certum Mini? When to choose the right solution.

When is a qualified digital seal appropriate in a healthcare facility?

Qualified Electronic Seal (QSeal) It is the „corporate equivalent” of a signature: it identifies entity (clinic, hospital, medical company), rather than an individual, and, in accordance with eIDAS, this creates a presumption of the document’s integrity and authenticity of origin.

Let's start with the limits, because that's where it's easiest to make a costly mistake:

  • stamp It cannot replace a doctor's signature on an EDM — The law requires the signature of a healthcare professional (one of four methods), because medical records document personal professional responsibility,
  • stamp is not intended for digitizing medical records — Article 13b of the Act on the Health Care Information System requires that a digital copy of a paper document be certified by authorized person a qualified electronic signature, a trusted signature, or a personal signature (unlike in employee files, where the Labor Code permits the employer’s seal).

Where does the seal actually serve the facility?

  • KSeF — As of April 1, 2026, the e-invoicing requirement has been extended to all other taxpayers, including those exempt from VAT, and therefore also applies to healthcare entities that issue invoices (commercial services, rentals, provision of documentation, clinical trials). Authentication stamp entity In KSeF, this happens automatically, without linking the invoicing system to the CEO—we explain how it works in the article: Qualified Seal (QSeal) — required in KSeF. Process automation and full access control,
  • organizational documents: regulations, price lists, directives, security policies — stamped, with verified origin and integrity,
  • the facility's bulk mail: Certificates, confirmations, and billing documents sent to patients and business partners can be stamped automatically via API.

You can find the cloud-based version of the seal here: SimplySign qualified electronic seal (starting at 1,289 PLN). The principle behind the division of roles is simple: The doctor signs — the facility stamps it.

How to Prepare Your Facility for EDM Signing — Step by Step

  1. Take inventory of documents and roles — Determine who issues electronic medical documents (doctors, nurses, paramedics), who scans the paper documents, and who signs contracts and invoices.
  2. Select signature methods for medical staff — a free ZUS certificate for new users or a QES certificate for those who also sign documents outside the healthcare sector.
  3. Equip your management team with QES — contracts, reports, HR, e-Deliveries; we explain how to get it in our guide: How to make a qualified electronic signature.
  4. Consider a qualified digital seal for your organization — especially under KSeF and for the automatic stamping of company documents.
  5. Configure signatures in the practice management system/HIS — Check with your software provider to see if it integrates with cloud-based digital signatures and the ZUS certificate.
  6. Describe the procedures — authorizations for digitization (Article 13b), rules for affixing signatures, and procedures for certificate expiration.
  7. Plan for long-term archiving — The documentation must be retained for at least 20 years, so make sure to include timestamps and maintain the signatures.
Diagram: Which signature goes on which document at a medical facility?
What type of signature is required for which document at a medical facility?

Summary

The law provides healthcare facilities with four equally valid methods for signing electronic medical records (EDM), but the choice of tools is an organizational decision: what a doctor needs to issue an e-prescriptions, a different one for a manager signing contracts, and yet another for an entity that will be invoicing in the KSeF format starting in April 2026.

  • ✅ EDM signs only: QES, trusted signature, personal signature, or ZUS certificate — internal entries can be approved using the office system's mechanisms.
  • ✅ The ZUS certificate is free, but it is valid only for health care — QES also handles contracts, HR, KSeF, and e-Deliveries—all with a single tool.
  • ✅ A qualified seal does not sign an EDM on behalf of a doctor — but it authenticates the facility in KSeF and automates the stamping of company documents.

Do you need help?

As authorized partner Certum We help healthcare facilities select and implement qualified digital signatures and seals—from individual practices to hospitals. We’ll advise you, set everything up, and train your team.

📞 Call us: +48 22 417 05 55 | ✉️ [email protected] Meet with an advisor at the office in Warsaw, Kraków, Wrocław, or Radom — or online and at a location of your choice.

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Frequently Asked Questions (FAQ)

What type of signature should be used to sign electronic medical records (EMR)?

Pursuant to Article 2(6) of the Act on the Health Care Information System, an EDM must be signed with a qualified electronic signature, a trusted signature, a personal signature (e-dowód), or using a free ZUS certificate. All four methods are legally equivalent for EDM—they differ in cost, convenience, and scope of application outside the healthcare sector.

Can a doctor sign an EDM using a free ZUS certificate?

Yes. The ZUS certificate is valid for 5 years; it can be downloaded for free from the ZUS portal or the gabinet.gov.pl app and is used to sign e-ZLA forms, e-prescriptions, e-referrals, and other electronic medical documents (EDM). However, it works exclusively in the healthcare sector—it cannot be used to sign contracts, offers, or company documents.

Is a trusted profile sufficient for signing medical documents?

A trusted signature is one of the four acceptable methods for signing electronic documents (EDM), so it is formally sufficient. In practice, however, it requires authorization of each signature, which is cumbersome when dealing with a large number of documents daily—which is why doctors more often opt for a ZUS certificate or a qualified digital signature integrated with their practice management system.

Can a qualified digital seal replace a doctor's signature on an EDM?

No. A qualified seal identifies a healthcare entity, not an individual, so it does not meet the legal requirement for a medical professional to sign an EDM. Within the facility, it is used for other purposes: authentication in KSeF, stamping organizational documents, and mass company correspondence.

How do you sign digitized (scanned) paper documents?

Pursuant to Article 13b of the Act on the Health Care Information System, digitization involves creating a digital copy and affixing a qualified electronic signature to it, a trusted signature, or a personal signature by a person authorized by the service provider to confirm that the digital copy conforms to the paper document. A qualified seal is not required in this context.

Does every entry in the practice management system have to be signed with a qualified digital signature?

No. Internal documentation (e.g., ongoing entries in health and medical records) can be approved using the internal mechanisms of the ICT system, which identifies the author and the time of the entry. A full electronic signature is required for EDM documents from the statutory catalog, including e-prescriptions, information cards, and laboratory test results.

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